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Crystal structure of putative glycerophosphoryl diester phosphodiesterase (17743486) from agrobacterium tumefaciens str. C58 (dupont) at 2.05 a resolution

Analyse Crystal structure of putative glycerophosphoryl diester phosphodiesterase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3KS5
Type: protein
Length: 495 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Glycerophosphoryl diester phosphodiesterase
UniProt: A9CLR1
Ligands: FE

Structure

x-ray diffraction · 2 distinct chains · 43% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Glycerophosphoryl diester phosphodiesterase	protein	247	43% helix, 21% strand	A9CLR1
B	Glycerophosphoryl diester phosphodiesterase	protein	248	42% helix, 21% strand	A9CLR1

Ligands and binding sites

FE · Fe (III) ion · metal · 2 copies · chains A, B
EDO · 1,2-ethanediol · additive · 10 copies · chains A, B
ACT · Acetate ion · additive · 7 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 18 modified (engineered).

Compared structures

3KS5 · Crystal structure of Putative glycerophosphoryl diester phosphodiesterase (17743486) from… · the same entry in another collection · chain A against A, TM-score 1.00

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Every structure of UniProt A9CLR1
Elsewhere: RCSB PDB 3KS5 · PDBe 3KS5 · UniProt A9CLR1

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