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Crystal structure of streptococcus pneumoniae SP1610, a putative tRNA (M1A22) methyltransferase

Analyse Crystal structure of streptococcus pneumoniae SP1610, a putative tRNA (M1A22)… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3KR9
Type: protein
Length: 222 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: SAM-dependent methyltransferase
EC: 2.1.1.36
UniProt: Q97PJ9
Pockets: 1 · best druggability 0.39

Structure

x-ray diffraction · 1 distinct chain · 48% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	SAM-dependent methyltransferase (EC 2.1.1.36)	protein	222	48% helix, 24% strand	Q97PJ9

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	116	0.39	0.74	18	empty

Compared structures

3KR9 · Crystal structure of Streptococcus pneumoniae Sp1610, a putative tRNA (m1A22)… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q97PJ9
Elsewhere: RCSB PDB 3KR9 · PDBe 3KR9 · UniProt Q97PJ9

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