Research workbench
Crystal structure of protein with a cyclophilin-like fold (YP_831253.1) from arthrobacter sp. FB24 at 1.90 a resolution
Analyse Crystal structure of protein with a cyclophilin-like fold (YP_831253.1) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3KOP
- Type
- protein
- Length
- 971 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- A0JVT3
- Pockets
- 7 · best druggability 0.71
Structure
x-ray diffraction · 6 distinct chains · 19% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 158 | 20% helix, 40% strand | A0JVT3 |
| B | Uncharacterized protein | protein | 156 | 18% helix, 40% strand | A0JVT3 |
| C | Uncharacterized protein | protein | 165 | 17% helix, 39% strand | A0JVT3 |
| D | Uncharacterized protein | protein | 158 | 18% helix, 40% strand | A0JVT3 |
| E | Uncharacterized protein | protein | 165 | 17% helix, 38% strand | A0JVT3 |
| F | Uncharacterized protein | protein | 169 | 26% helix, 37% strand | A0JVT3 |
Pockets
7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 823 | 0.71 | 0.77 | 120 | empty |
| 2 | 510 | 0.65 | 0.77 | 86 | empty |
| 3 | 555 | 0.61 | 0.74 | 65 | empty |
| 4 | 267 | 0.51 | 0.74 | 51 | empty |
| 5 | 105 | 0.37 | 0.74 | 24 | empty |
Interfaces
12 interfaces between chains.
- C–E · 1432 Ų buried · 44 hydrogen bonds · protein-protein
- A–B · 1369 Ų buried · 45 hydrogen bonds · protein-protein
- D–F · 1305 Ų buried · 38 hydrogen bonds · protein-protein
- B–E · 492 Ų buried · 14 hydrogen bonds · protein-protein
- C–F · 490 Ų buried · 14 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 18 modified (engineered).
Compared structures
- 3KOP · Crystal structure of Protein with a cyclophilin-like fold (YP_831253.1) from Arthrobacter… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0JVT3
- Elsewhere: RCSB PDB 3KOP · PDBe 3KOP · UniProt A0JVT3
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