Research workbench
Crystal structure of protein MJ1225 from methanocaldococcus jannaschii, a putative archaeal homolog of G-ampk.
Analyse Crystal structure of protein MJ1225 from methanocaldococcus jannaschii, a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3KH5
- Type
- protein
- Length
- 278 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein MJ1225
- EC
- 1.1.1.34
- UniProt
- Q58622
- Ligands
- ADP, AMP, SO4
- Pockets
- 2 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein MJ1225 (EC 1.1.1.34) | protein | 278 | 43% helix, 23% strand | Q58622 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · 3 copies · chains A
- AMP · Adenosine monophosphate · ligand · 2 copies · chains A
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 879 | 0.77 | 0.80 | 71 | ADP, AMP |
| 2 | 80 | 0.46 | 0.81 | 13 | empty |
Compared structures
- 3KH5 · Crystal Structure of Protein MJ1225 from Methanocaldococcus jannaschii, a putative… · the same entry in another collection · chain A against A, TM-score 1.00
- Q58622 · AlphaFold monomer V2.0 prediction for uncharacterized protein MJ1225 (Q58622) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q58622
- Elsewhere: RCSB PDB 3KH5 · PDBe 3KH5 · UniProt Q58622
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