Research workbench
Crystal structure of C. tropicalis STN1-TEN1 complex
Analyse Crystal structure of C. tropicalis STN1-TEN1 complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3KF8
- Type
- protein
- Length
- 642 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein STN1; Protein TEN1
- UniProt
- C5M7K9, C5M4J8
- Pockets
- 8 · best druggability 0.65
Structure
x-ray diffraction · 4 distinct chains · 23% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein STN1 | protein | 207 | 24% helix, 33% strand | C5M7K9 |
| B | Protein TEN1 | protein | 120 | 24% helix, 35% strand | C5M4J8 |
| C | Protein STN1 | protein | 192 | 24% helix, 36% strand | C5M7K9 |
| D | Protein TEN1 | protein | 123 | 20% helix, 35% strand | C5M4J8 |
Pockets
8 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 225 | 0.65 | 0.83 | 27 | empty |
| 2 | 332 | 0.55 | 0.75 | 43 | empty |
| 3 | 160 | 0.47 | 0.76 | 15 | empty |
| 4 | 108 | 0.46 | 0.79 | 19 | empty |
| 5 | 61 | 0.44 | 0.83 | 18 | empty |
Interfaces
4 interfaces between chains.
- C–D · 1368 Ų buried · 21 hydrogen bonds · protein-protein
- A–B · 1118 Ų buried · 12 hydrogen bonds · protein-protein
- B–C · 466 Ų buried · 1 hydrogen bond · protein-protein
- B–D · 160 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 3KF8 · Crystal structure of C. tropicalis Stn1-ten1 complex · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C5M7K9
- Every structure of UniProt C5M4J8
- Elsewhere: RCSB PDB 3KF8 · PDBe 3KF8 · UniProt C5M7K9 · UniProt C5M4J8
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