Research workbench
Crystal structure of putative beta-phosphoglucomutase from thermotoga maritima
Analyse Crystal structure of putative beta-phosphoglucomutase from thermotoga maritima in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3KBB
- Type
- protein
- Length
- 216 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphorylated carbohydrates phosphatase TM_1254
- EC
- 3.1.3.-
- UniProt
- Q9X0Y1
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.43
Structure
x-ray diffraction · 1 distinct chain · 53% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphorylated carbohydrates phosphatase TM_1254 (EC 3.1.3.-) | protein | 216 | 53% helix, 13% strand | Q9X0Y1 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 195 | 0.43 | 0.73 | 29 | SO4 |
| 2 | 77 | 0.39 | 0.78 | 13 | empty |
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 3KBB · Crystal structure of putative beta-phosphoglucomutase from Thermotoga maritima · the same entry in another collection · chain A against A, TM-score 1.00
- Q9X0Y1 · AlphaFold monomer V2.0 prediction for phosphorylated carbohydrates phosphatase TM_1254… · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9X0Y1
- Elsewhere: RCSB PDB 3KBB · PDBe 3KBB · UniProt Q9X0Y1
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