Research workbench
Crystal structure of PA2107 protein from pseudomonas aeruginosa, northeast structural genomics consortium target PAR198
Analyse Crystal structure of PA2107 protein from pseudomonas aeruginosa, northeast… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3KAW
- Type
- protein
- Length
- 800 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein PA2107
- UniProt
- Q9I208
- Ligands
- SO4
- Pockets
- 8 · best druggability 0.57
Structure
x-ray diffraction · 3 distinct chains · 81% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, H | Uncharacterized protein PA2107 | protein | 99 | 81% helix, 0% strand | Q9I208 |
| B, D, E, G | Uncharacterized protein PA2107 | protein | 100 | 83% helix, 0% strand | Q9I208 |
| C, F | Uncharacterized protein PA2107 | protein | 101 | 79% helix, 0% strand | Q9I208 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 211 | 0.57 | 0.80 | 34 | empty |
| 2 | 171 | 0.53 | 0.80 | 28 | empty |
| 3 | 120 | 0.52 | 0.82 | 28 | empty |
| 4 | 151 | 0.51 | 0.79 | 29 | empty |
| 5 | 135 | 0.49 | 0.79 | 24 | empty |
Interfaces
13 interfaces between chains.
- G–H · 888 Ų buried · 10 hydrogen bonds · protein-protein
- C–D · 858 Ų buried · 9 hydrogen bonds · protein-protein
- E–F · 853 Ų buried · 8 hydrogen bonds · protein-protein
- A–B · 842 Ų buried · 8 hydrogen bonds · protein-protein
- D–E · 510 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 3KAW · Crystal Structure of PA2107 PROTEIN from Pseudomonas aeruginosa, Northeast Structural… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9I208
- Elsewhere: RCSB PDB 3KAW · PDBe 3KAW · UniProt Q9I208
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.