Research workbench
X-ray structure of the rhodanese-like domain of the ALR3790 protein from anabaena sp. northeast structural genomics consortium target NSR437C.
Analyse X-ray structure of the rhodanese-like domain of the ALR3790 protein from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3K9R
- Type
- protein
- Length
- 404 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ALR3790 protein
- UniProt
- Q8YQN0
- Pockets
- 4 · best druggability 0.63
Structure
x-ray diffraction · 4 distinct chains · 41% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ALR3790 protein | protein | 99 | 40% helix, 19% strand | Q8YQN0 |
| B | ALR3790 protein | protein | 101 | 39% helix, 20% strand | Q8YQN0 |
| C | ALR3790 protein | protein | 106 | 42% helix, 18% strand | Q8YQN0 |
| D | ALR3790 protein | protein | 98 | 45% helix, 19% strand | Q8YQN0 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 297 | 0.63 | 0.80 | 28 | empty |
| 2 | 296 | 0.63 | 0.80 | 30 | empty |
| 3 | 192 | 0.47 | 0.75 | 31 | empty |
| 4 | 59 | 0.37 | 0.80 | 17 | empty |
Interfaces
4 interfaces between chains.
- A–B · 1346 Ų buried · 27 hydrogen bonds · protein-protein
- C–D · 1284 Ų buried · 26 hydrogen bonds · protein-protein
- A–D · 253 Ų buried · 3 hydrogen bonds · protein-protein
- A–C · 83 Ų buried · 2 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 12 modified (engineered).
Compared structures
- 3K9R · X-ray structure of the Rhodanese-like domain of the Alr3790 protein from Anabaena sp.… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8YQN0
- Elsewhere: RCSB PDB 3K9R · PDBe 3K9R · UniProt Q8YQN0
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