Research workbench
Transposase domain of metnase
Analyse Transposase domain of metnase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3K9K
- Type
- protein
- Length
- 417 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Histone-lysine N-methyltransferase setmar
- EC
- 2.1.1.43
- UniProt
- Q53H47
- Pockets
- 5 · best druggability 0.73
Structure
x-ray diffraction · 2 distinct chains · 47% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Histone-lysine N-methyltransferase setmar (EC 2.1.1.43) | protein | 211 | 46% helix, 18% strand | Q53H47 |
| B | Histone-lysine N-methyltransferase setmar (EC 2.1.1.43) | protein | 206 | 49% helix, 19% strand | Q53H47 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 641 | 0.73 | 0.80 | 70 | empty |
| 2 | 56 | 0.43 | 0.83 | 17 | empty |
| 3 | 124 | 0.43 | 0.76 | 22 | empty |
| 4 | 87 | 0.40 | 0.78 | 21 | empty |
| 5 | 62 | 0.33 | 0.77 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 1395 Ų buried · 16 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q53H47
- Elsewhere: RCSB PDB 3K9K · PDBe 3K9K · UniProt Q53H47
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