Research workbench
Crystal structure of the peptidase domain of streptococcus coma, a bi- functional ABC transporter involved in quorum sensing pathway
Analyse Crystal structure of the peptidase domain of streptococcus coma, a bi… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3K8U
- Type
- protein
- Length
- 137 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative ABC transporter, ATP-binding protein coma
- UniProt
- Q8DW05
- Pockets
- 1 · best druggability 0.25
Structure
x-ray diffraction · 1 distinct chain · 30% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative ABC transporter, ATP-binding protein coma | protein | 137 | 30% helix, 36% strand | Q8DW05 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 52 | 0.25 | 0.74 | 14 | empty |
Compared structures
- 3K8U · Crystal Structure of the Peptidase Domain of Streptococcus ComA, a Bi-functional ABC… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DW05
- Elsewhere: RCSB PDB 3K8U · PDBe 3K8U · UniProt Q8DW05
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