Research workbench
Structure of type B ribose 5-phosphate isomerase from trypanosoma cruzi
Analyse Structure of type B ribose 5-phosphate isomerase from trypanosoma cruzi in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3K7O
- Type
- protein
- Length
- 301 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribose 5-phosphate isomerase
- EC
- 5.3.1.6
- UniProt
- A1BTJ7
- Pockets
- 2 · best druggability 0.49
Structure
x-ray diffraction · 2 distinct chains · 49% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribose 5-phosphate isomerase (EC 5.3.1.6) | protein | 151 | 48% helix, 17% strand | A1BTJ7 |
| B | Ribose 5-phosphate isomerase (EC 5.3.1.6) | protein | 150 | 50% helix, 16% strand | A1BTJ7 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 99 | 0.49 | 0.81 | 17 | empty |
| 2 | 100 | 0.48 | 0.81 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 1799 Ų buried · 26 hydrogen bonds · protein-protein
Compared structures
- 3K7O · Structure of type B ribose 5-phosphate isomerase from Trypanosoma cruzi · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A1BTJ7
- Elsewhere: RCSB PDB 3K7O · PDBe 3K7O · UniProt A1BTJ7
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