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Crystal structure of protein of unknown function DUF1344 (YP_001299214.1) from bacteroides vulgatus atcc 8482 at 2.00 a resolution
Analyse Crystal structure of protein of unknown function DUF1344 (YP_001299214.1) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3K6O
- Type
- protein
- Length
- 422 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein DUF1344
- UniProt
- A6L1M8
- Ligands
- SO4
- Pockets
- 5 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Uncharacterized protein DUF1344 | protein | 211 | 6% helix, 48% strand | A6L1M8 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 4 copies · chains A, B
- PG4 · Tetraethylene glycol · additive · 6 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 840 | 0.72 | 0.78 | 82 | PG4 |
| 2 | 108 | 0.42 | 0.77 | 22 | empty |
| 3 | 105 | 0.40 | 0.76 | 22 | empty |
| 4 | 83 | 0.38 | 0.76 | 23 | empty |
| 5 | 75 | 0.35 | 0.75 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 610 Ų buried · 7 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 14 modified (engineered).
Compared structures
- 3K6O · Crystal structure of protein of unknown function DUF1344 (YP_001299214.1) from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A6L1M8
- Elsewhere: RCSB PDB 3K6O · PDBe 3K6O · UniProt A6L1M8
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