Research workbench
Crystal structure of protein AF1124 from archaeoglobus fulgidus
Analyse Crystal structure of protein AF1124 from archaeoglobus fulgidus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3K67
- Type
- protein
- Length
- 312 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative dehydratase AF1124
- UniProt
- O29141
- Ligands
- PO4
- Pockets
- 2 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Putative dehydratase AF1124 | protein | 156 | 32% helix, 33% strand | O29141 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 80 | 0.61 | 0.89 | 24 | empty |
| 2 | 82 | 0.57 | 0.87 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 2980 Ų buried · 42 hydrogen bonds · protein-protein
Compared structures
- 3K67 · Crystal structure of protein af1124 from archaeoglobus fulgidus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O29141
- Elsewhere: RCSB PDB 3K67 · PDBe 3K67 · UniProt O29141
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