Research workbench
Crystal structure of mouse T-cadherin EC1 EC2
Analyse Crystal structure of mouse T-cadherin EC1 EC2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3K5R
- Type
- protein
- Length
- 436 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cadherin 13
- UniProt
- Q8VDK4
- Pockets
- 6 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 5% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Cadherin 13 | protein | 218 | 5% helix, 44% strand | Q8VDK4 |
Pockets
6 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 252 | 0.49 | 0.74 | 29 | empty |
| 2 | 231 | 0.48 | 0.74 | 27 | empty |
| 3 | 114 | 0.48 | 0.80 | 24 | empty |
| 4 | 119 | 0.46 | 0.79 | 23 | empty |
| 5 | 55 | 0.31 | 0.76 | 15 | empty |
Compared structures
- 3K5R · Crystal Structure of mouse T-cadherin EC1 EC2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8VDK4
- Elsewhere: RCSB PDB 3K5R · PDBe 3K5R · UniProt Q8VDK4
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