Research workbench
Structure determination of feline panleukopenia virus empty particles
Analyse Structure determination of feline panleukopenia virus empty particles in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1FPV
- Type
- protein
- Length
- 548 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Feline panleukopenia virus (strain B) viral protein 2
- UniProt
- P24840
- Pockets
- 10 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 4% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Feline panleukopenia virus (strain B) viral protein 2 | protein | 548 | 4% helix, 26% strand | P24840 |
Pockets
10 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 582 | 0.67 | 0.77 | 70 | empty |
| 2 | 53 | 0.65 | 0.95 | 20 | empty |
| 3 | 363 | 0.54 | 0.74 | 34 | empty |
| 4 | 189 | 0.52 | 0.78 | 30 | empty |
| 5 | 119 | 0.42 | 0.76 | 24 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 1FPV · Structure determination of feline panleukopenia virus empty particles · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P24840
- Elsewhere: RCSB PDB 1FPV · PDBe 1FPV · UniProt P24840
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