Research workbench
Structure of the cbs pair of a putative D-arabinose 5-phosphate isomerase from klebsiella pneumoniae subsp. pneumoniae.
Analyse Structure of the cbs pair of a putative D-arabinose 5-phosphate isomerase from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3K2V
- Type
- protein
- Length
- 258 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative D-arabinose 5-phosphate isomerase
- UniProt
- A6TEL6
- Ligands
- CMK, SO4
- Pockets
- 1 · best druggability 0.72
Structure
x-ray diffraction · 2 distinct chains · 38% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative D-arabinose 5-phosphate isomerase | protein | 130 | 38% helix, 28% strand | A6TEL6 |
| B | Putative D-arabinose 5-phosphate isomerase | protein | 128 | 38% helix, 29% strand | A6TEL6 |
Ligands and binding sites
- CMK · Cytidine 5'-monophosphate 3-deoxy-beta-D-gulo-oct-2-ulo-pyranosonic acid · ligand · 2 copies · chains A, B
- SO4 · Sulfate ion · ion · chains A
- GOL · Glycerol · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 552 | 0.72 | 0.81 | 55 | CMK, GOL |
Interfaces
1 interface between chains.
- A–B · 1463 Ų buried · 24 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 14 modified (engineered).
Compared structures
- 3K2V · Structure of the CBS pair of a putative D-arabinose 5-phosphate isomerase from Klebsiella… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A6TEL6
- Elsewhere: RCSB PDB 3K2V · PDBe 3K2V · UniProt A6TEL6
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.