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Crystal structure of SLR1438 protein from synechocystis sp. pcc 6803, northeast structural genomics consortium target SGR112
Analyse Crystal structure of SLR1438 protein from synechocystis sp. pcc 6803, northeast… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3K25
- Type
- protein
- Length
- 578 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SLR1438 protein
- UniProt
- P73504
- Ligands
- PO4
- Pockets
- 6 · best druggability 0.47
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 50% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | SLR1438 protein | protein | 289 | 7% helix, 50% strand | P73504 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 179 | 0.47 | 0.75 | 24 | empty |
| 2 | 104 | 0.45 | 0.79 | 19 | empty |
| 3 | 82 | 0.43 | 0.80 | 19 | PO4 |
| 4 | 91 | 0.35 | 0.74 | 16 | empty |
| 5 | 53 | 0.32 | 0.77 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 1425 Ų buried · 25 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 3K25 · Crystal Structure of Slr1438 protein from Synechocystis sp. PCC 6803, Northeast… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P73504
- Elsewhere: RCSB PDB 3K25 · PDBe 3K25 · UniProt P73504
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