Research workbench
Crystal structure of human haloacid dehalogenase-like hydrolase domain containing 3 (HDHD3)
Analyse Crystal structure of human haloacid dehalogenase-like hydrolase domain… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3K1Z
- Type
- protein
- Length
- 241 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Haloacid dehalogenase-like hydrolase domain-containing protein 3
- UniProt
- Q9BSH5
- Pockets
- 1 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 56% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Haloacid dehalogenase-like hydrolase domain-containing protein 3 | protein | 241 | 56% helix, 13% strand | Q9BSH5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 387 | 0.65 | 0.79 | 42 | GOL |
Modifications
Observed in the structure: 3 modified (engineered).
Compared structures
- 3K1Z · Crystal Structure of Human Haloacid Dehalogenase-like Hydrolase Domain containing 3… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9BSH5 · AlphaFold monomer V2.0 prediction for haloacid dehalogenase-like hydrolase… · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9BSH5
- Elsewhere: RCSB PDB 3K1Z · PDBe 3K1Z · UniProt Q9BSH5
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