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Crystal structure of glycogen branching enzyme synonym: 1,4-alpha-D- GLUCAN:1,4-alpha-D-glucan 6-glucosyl-transferase from mycobacterium tuberculosis H37RV
Analyse Crystal structure of glycogen branching enzyme synonym: 1,4-alpha-D… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3K1D
- Type
- protein
- Length
- 722 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 1,4-alpha-glucan-branching enzyme
- EC
- 2.4.1.18
- UniProt
- Q10625
- Pockets
- 5 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 28% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 1,4-alpha-glucan-branching enzyme (EC 2.4.1.18) | protein | 722 | 28% helix, 25% strand | Q10625 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 189 | 0.53 | 0.78 | 30 | empty |
| 2 | 179 | 0.50 | 0.77 | 25 | empty |
| 3 | 101 | 0.49 | 0.81 | 26 | empty |
| 4 | 81 | 0.41 | 0.78 | 14 | empty |
| 5 | 76 | 0.30 | 0.73 | 19 | empty |
Compared structures
- 3K1D · Crystal structure of glycogen branching enzyme synonym… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q10625
- Elsewhere: RCSB PDB 3K1D · PDBe 3K1D · UniProt Q10625
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