Research workbench
Structure of ompf porin
Analyse Structure of ompf porin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3K1B
- Type
- protein
- Length
- 1,360 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Outer membrane protein F
- UniProt
- P02931
- Pockets
- 13 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 4% helix, 54% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Outer membrane protein F | protein | 340 | 4% helix, 54% strand | P02931 |
Pockets
13 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 61 | 0.75 | 0.99 | 27 | empty |
| 2 | 989 | 0.70 | 0.74 | 67 | empty |
| 3 | 874 | 0.69 | 0.75 | 75 | empty |
| 4 | 955 | 0.69 | 0.74 | 67 | empty |
| 5 | 781 | 0.67 | 0.74 | 59 | empty |
Interfaces
5 interfaces between chains.
- A–C · 1534 Ų buried · 18 hydrogen bonds · protein-protein
- A–B · 1524 Ų buried · 22 hydrogen bonds · protein-protein
- B–C · 1512 Ų buried · 15 hydrogen bonds · protein-protein
- B–D · 328 Ų buried · 6 hydrogen bonds · protein-protein
- C–D · 24 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02931
- Elsewhere: RCSB PDB 3K1B · PDBe 3K1B · UniProt P02931
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.