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Crystal structure of the gef domain of DRRA/SIDM from legionella pneumophila

Analyse Crystal structure of the gef domain of DRRA/SIDM from legionella pneumophila in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3JZ9
Type: protein
Length: 197 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein drra
UniProt: Q5ZSQ3
Pockets: 1 · best druggability 0.29

Structure

x-ray diffraction · 1 distinct chain · 66% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein drra	protein	197	66% helix, 2% strand	Q5ZSQ3

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	54	0.29	0.74	11	empty

Modifications

Observed in the structure: 8 modified (engineered).

Compared structures

3JZ9 · Crystal structure of the GEF domain of DrrA/SidM from Legionella pneumophila · the same entry in another collection · chain A against A, TM-score 1.00
Q5ZSQ3 · AlphaFold monomer V2.0 prediction for multifunctional virulence effector protein drra… · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5ZSQ3
Elsewhere: RCSB PDB 3JZ9 · PDBe 3JZ9 · UniProt Q5ZSQ3

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