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Crystal structure of susd superfamily protein (YP_001298690.1) from bacteroides vulgatus atcc 8482 at 2.00 a resolution

Analyse Crystal structure of susd superfamily protein (YP_001298690.1) from bacteroides… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3JYS
Type: protein
Length: 479 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Susd superfamily protein
UniProt: A6L054
Ligands: MG
Pockets: 4 · best druggability 0.43

Structure

x-ray diffraction · 1 distinct chain · 47% helix, 5% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Susd superfamily protein	protein	479	47% helix, 5% strand	A6L054

Ligands and binding sites

MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	124	0.43	0.76	21	empty
2	146	0.40	0.73	25	empty
3	101	0.35	0.74	12	empty
4	86	0.32	0.73	21	empty

Modifications

Observed in the structure: 9 modified (engineered).

Compared structures

3JYS · Crystal structure of SusD superfamily protein (YP_001298690.1) from Bacteroides vulgatus… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A6L054
Elsewhere: RCSB PDB 3JYS · PDBe 3JYS · UniProt A6L054

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