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Crystal structure of an octomeric two-subunit trka K+ channel ring gating assembly, TM1088A:TM1088B, from thermotoga maritima
Analyse Crystal structure of an octomeric two-subunit trka K+ channel ring gating… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3JXO
- Type
- protein
- Length
- 169 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Trka-N domain protein
- UniProt
- B1L831
- Pockets
- 1 · best druggability 0.56
Structure
x-ray diffraction · 2 distinct chains · 14% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Trka-N domain protein | protein | 84 | 13% helix, 38% strand | B1L831 |
| B | Trka-N domain protein | protein | 85 | 14% helix, 38% strand | B1L831 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 270 | 0.56 | 0.77 | 28 | empty |
Interfaces
1 interface between chains.
- A–B · 932 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 3JXO · Crystal Structure of an Octomeric Two-Subunit TrkA K+ Channel Ring Gating Assembly… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B1L831
- Elsewhere: RCSB PDB 3JXO · PDBe 3JXO · UniProt B1L831
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