Research workbench
Legionella pneumophila glucosyltransferase LGT1 N293A with udp-glc
Analyse Legionella pneumophila glucosyltransferase LGT1 N293A with udp-glc in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3JSZ
- Type
- protein
- Length
- 520 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative uncharacterized protein
- UniProt
- Q5WWY0
- Ligands
- UPG, MG
- Pockets
- 4 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative uncharacterized protein | protein | 520 | 51% helix, 12% strand | Q5WWY0 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 663 | 0.72 | 0.79 | 55 | UPG, MG |
| 2 | 174 | 0.43 | 0.74 | 34 | empty |
| 3 | 102 | 0.37 | 0.75 | 16 | empty |
| 4 | 55 | 0.35 | 0.79 | 16 | empty |
Modifications
Observed in the structure: 12 modified (engineered).
Compared structures
- 3JSZ · Legionella pneumophila glucosyltransferase Lgt1 N293A with UDP-Glc · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5WWY0
- Elsewhere: RCSB PDB 3JSZ · PDBe 3JSZ · UniProt Q5WWY0
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