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N-terminal fragment of ribosomal protein L10 from methanococcus jannaschii

Analyse N-terminal fragment of ribosomal protein L10 from methanococcus jannaschii in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3JSY
Type: protein
Length: 418 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Acidic ribosomal protein P0 homolog
UniProt: P54049
Pockets: 4 · best druggability 0.64

Structure

x-ray diffraction · 2 distinct chains · 39% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Acidic ribosomal protein P0 homolog	protein	213	39% helix, 26% strand	P54049
B	Acidic ribosomal protein P0 homolog	protein	205	39% helix, 27% strand	P54049

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	532	0.64	0.76	49	empty
2	159	0.51	0.79	22	empty
3	85	0.40	0.77	13	empty
4	117	0.38	0.74	20	empty

Interfaces

1 interface between chains.

A–B · 582 Å² buried · 12 hydrogen bonds · protein-protein

Compared structures

3JSY · N-terminal fragment of ribosomal protein L10 from Methanococcus jannaschii · the same entry in another collection · chain A against A, TM-score 1.00
P54049 · AlphaFold monomer V2.0 prediction for 50S ribosomal protein L10 (P54049) · a predicted model of the same protein · chain A against A, TM-score 0.91

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P54049
Elsewhere: RCSB PDB 3JSY · PDBe 3JSY · UniProt P54049

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