Research workbench
Crystal structure of the adenylation domain of NAD+- dependent DNA ligase from staphylococcus aureus
Analyse Crystal structure of the adenylation domain of NAD+- dependent DNA ligase from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3JSN
- Type
- protein
- Length
- 297 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA ligase
- EC
- 6.5.1.2
- UniProt
- Q9AIU7
- Pockets
- 3 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA ligase (EC 6.5.1.2) | protein | 297 | 40% helix, 23% strand | Q9AIU7 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 302 | 0.68 | 0.83 | 44 | empty |
| 2 | 133 | 0.47 | 0.78 | 23 | empty |
| 3 | 72 | 0.37 | 0.77 | 18 | empty |
Compared structures
- 3JSN · Crystal structure of the adenylation domain of NAD+-dependent DNA ligase from… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9AIU7 · AlphaFold monomer V2.0 prediction for DNA ligase (Q9AIU7) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9AIU7
- Elsewhere: RCSB PDB 3JSN · PDBe 3JSN · UniProt Q9AIU7
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