Research workbench
Atomic structure of a non-enveloped virus reveals pH sensors for a coordinated process of cell entry
Analyse Atomic structure of a non-enveloped virus reveals pH sensors for a coordinated… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3J9E
- Type
- protein
- Length
- 520 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- VP5
- UniProt
- K7QP12
- Pockets
- 5 · best druggability 0.80
Structure
electron microscopy · 1 distinct chain · 52% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| D | VP5 | protein | 520 | 52% helix, 8% strand | K7QP12 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 575 | 0.80 | 0.86 | 73 | empty |
| 2 | 104 | 0.38 | 0.75 | 18 | empty |
| 3 | 51 | 0.35 | 0.79 | 14 | empty |
| 4 | 90 | 0.34 | 0.74 | 14 | empty |
| 5 | 82 | 0.32 | 0.74 | 18 | empty |
Compared structures
- 3J9E · Atomic structure of a non-enveloped virus reveals pH sensors for a coordinated process of… · the same entry in another collection · chain D against D, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt K7QP12
- Elsewhere: RCSB PDB 3J9E · PDBe 3J9E · UniProt K7QP12
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