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Virus model of brome mosaic virus (second half data set)

Analyse Virus model of brome mosaic virus (second half data set) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3J7N
Type: protein
Length: 478 residues
Chains: 3
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Capsid protein
UniProt: P03602
Pockets: 6 · best druggability 0.65

Structure

electron microscopy · 3 distinct chains · 9% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Capsid protein	protein	149	7% helix, 26% strand	P03602
B	Capsid protein	protein	165	10% helix, 24% strand	P03602
C	Capsid protein	protein	164	11% helix, 24% strand	P03602

Pockets

6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	614	0.65	0.75	79	empty
2	397	0.62	0.77	51	empty
3	333	0.61	0.78	43	empty
4	108	0.43	0.78	17	empty
5	60	0.39	0.80	13	empty

Interfaces

3 interfaces between chains.

A–B · 580 Å² buried · 6 hydrogen bonds · protein-protein
A–C · 501 Å² buried · 7 hydrogen bonds · protein-protein
B–C · 413 Å² buried · 1 hydrogen bond · protein-protein

Compared structures

3J7N · Virus model of brome mosaic virus (second half data set) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P03602
Elsewhere: RCSB PDB 3J7N · PDBe 3J7N · UniProt P03602

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