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Structure of GP8 connector protein

Analyse Structure of GP8 connector protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3J4A
Type: protein
Length: 5,964 residues
Chains: 12
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Head-to-tail joining protein
UniProt: P03728
Pockets: 5 · best druggability 0.39

Structure

electron microscopy · 1 distinct chain · 0% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, J, K, L, B, C, D, E, F, G, H, I	Head-to-tail joining protein	protein	497	0% helix, 0% strand	P03728

Pockets

5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	117	0.39	0.73	36	empty
2	88	0.35	0.73	27	empty
3	73	0.33	0.73	30	empty
4	61	0.33	0.74	27	empty
5	58	0.30	0.73	22	empty

Interfaces

12 interfaces between chains.

C–D · 1064 Å² buried · 0 hydrogen bonds · protein-protein
G–H · 1061 Å² buried · 0 hydrogen bonds · protein-protein
A–L · 1060 Å² buried · 0 hydrogen bonds · protein-protein
H–I · 1060 Å² buried · 0 hydrogen bonds · protein-protein
D–E · 1060 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

3J4A · Structure of gp8 connector protein · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P03728
Elsewhere: RCSB PDB 3J4A · PDBe 3J4A · UniProt P03728

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