Research workbench
Independent reconstruction of mm-cpn cryo-EM density MAP from half dataset in the closed state (training MAP)
Analyse Independent reconstruction of mm-cpn cryo-EM density MAP from half dataset in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3J3X
- Type
- protein
- Length
- 8,160 residues
- Chains
- 16
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chaperonin
- UniProt
- Q877G8
- Pockets
- 20 · best druggability 0.86
Structure
electron microscopy · 1 distinct chain · 53% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P | Chaperonin | protein | 510 | 53% helix, 18% strand | Q877G8 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 515 | 0.86 | 0.92 | 102 | empty |
| 2 | 504 | 0.85 | 0.92 | 89 | empty |
| 3 | 638 | 0.85 | 0.90 | 102 | empty |
| 4 | 501 | 0.85 | 0.91 | 84 | empty |
| 5 | 682 | 0.85 | 0.89 | 103 | empty |
Interfaces
48 interfaces between chains.
- N–O · 2934 Ų buried · 37 hydrogen bonds · protein-protein
- I–J · 2934 Ų buried · 37 hydrogen bonds · protein-protein
- A–H · 2934 Ų buried · 37 hydrogen bonds · protein-protein
- O–P · 2933 Ų buried · 37 hydrogen bonds · protein-protein
- C–D · 2933 Ų buried · 37 hydrogen bonds · protein-protein
Compared structures
- 3J3X · Independent reconstruction of Mm-cpn cryo-EM density map from half dataset in the closed… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q877G8
- Elsewhere: RCSB PDB 3J3X · PDBe 3J3X · UniProt Q877G8
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