Research workbench
Life in the extremes: atomic structure of sulfolobus turreted icosahedral virus
Analyse Life in the extremes: atomic structure of sulfolobus turreted icosahedral virus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3J31
- Type
- protein
- Length
- 5,768 residues
- Chains
- 18
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- A223 penton base; A55 membrane protein; Coat protein; C381 turret protein
- UniProt
- Q6Q0L4, Q6Q0J0, Q6Q0L3
- Pockets
- 20 · best druggability 0.88
Structure
electron microscopy · 4 distinct chains · 7% helix, 53% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| Q | A223 penton base | protein | 220 | 0% helix, 62% strand | Q6Q0L4 |
| R | A55 membrane protein | protein | 15 | 0% helix, 80% strand | — |
| A, B, C, D, E, F, G, H, I, J, K, L, M, N, O | Coat protein | protein | 344 | 15% helix, 42% strand | Q6Q0J0 |
| P | C381 turret protein | protein | 373 | 3% helix, 57% strand | Q6Q0L3 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1009 | 0.88 | 0.90 | 128 | empty |
| 2 | 841 | 0.86 | 0.89 | 122 | empty |
| 3 | 380 | 0.78 | 0.87 | 56 | empty |
| 4 | 389 | 0.78 | 0.87 | 66 | empty |
| 5 | 855 | 0.78 | 0.81 | 103 | empty |
Interfaces
33 interfaces between chains.
- G–I · 915 Ų buried · 12 hydrogen bonds · protein-protein
- D–F · 898 Ų buried · 13 hydrogen bonds · protein-protein
- A–C · 893 Ų buried · 13 hydrogen bonds · protein-protein
- K–L · 884 Ų buried · 10 hydrogen bonds · protein-protein
- A–B · 872 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 3J31 · Life in the extremes: atomic structure of Sulfolobus Turreted Icosahedral Virus · the same entry in another collection · chain Q against Q, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6Q0L4
- Every structure of UniProt Q6Q0J0
- Every structure of UniProt Q6Q0L3
- Elsewhere: RCSB PDB 3J31 · PDBe 3J31 · UniProt Q6Q0L4 · UniProt Q6Q0J0 · UniProt Q6Q0L3
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.