Research workbench

Core of mammalian 80S pre-ribosome in complex with trnas fitted to a 9A cryo-EM MAP: classic pre state 2

Analyse Core of mammalian 80S pre-ribosome in complex with trnas fitted to a 9A cryo-EM… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3J0O
Type: protein + RNA
Length: 1,710 residues
Chains: 30
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA

Structure

electron microscopy · 28 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
a	—	rna	48	—	—
b	—	rna	12	—	—
c	—	rna	17	—	—
d	—	rna	7	—	—
e	—	rna	4	—	—
E	—	rna	5	—	—
f	—	rna	21	—	—
g	—	rna	31	—	—
G	—	rna	13	—	—
h	—	rna	111	—	—
T	—	protein	192	—	—
K	—	protein	140	—	—
L	—	protein	141	—	—
X	—	protein	68	—	—
S	—	protein	125	—	—
2	—	rna	112	—	—
3	—	rna	12	—	—
4	—	rna	14	—	—
5	—	rna	6	—	—
6	—	rna	19	—	—
7	—	rna	50	—	—
8	—	rna	20	—	—
B	—	protein	213	—	—
F	—	protein	95	—	—
Y, V	—	rna	75	—	—
y, v	—	rna	3	—	—
W	—	rna	76	—	—
w	—	rna	2	—	—

Compared structures

3J0O · Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9A cryo-EM map… · the same entry in another collection · chain b against b, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 3J0O · PDBe 3J0O

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