Research workbench
Fitting of the phikz GP29PR structure into the cryo-EM density MAP of the phikz polysheath
Analyse Fitting of the phikz GP29PR structure into the cryo-EM density MAP of the phikz… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3J0I
- Type
- protein
- Length
- 1,512 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- PHIKZ029
- UniProt
- Q8SDD3
- Pockets
- 6 · best druggability 0.35
Structure
electron microscopy · 1 distinct chain · 19% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | PHIKZ029 | protein | 252 | 19% helix, 32% strand | Q8SDD3 |
Pockets
6 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 69 | 0.35 | 0.76 | 21 | empty |
| 2 | 74 | 0.35 | 0.76 | 24 | empty |
| 3 | 69 | 0.33 | 0.75 | 22 | empty |
| 4 | 57 | 0.31 | 0.76 | 13 | empty |
| 5 | 60 | 0.30 | 0.75 | 15 | empty |
Compared structures
- 3J0I · Fitting of the phiKZ gp29PR structure into the cryo-EM density map of the phiKZ polysheath · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8SDD3
- Elsewhere: RCSB PDB 3J0I · PDBe 3J0I · UniProt Q8SDD3
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