Research workbench

Lidless mm-cpn in the closed state with ATP/ALFX

Analyse Lidless mm-cpn in the closed state with ATP/ALFX in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3J03
Type: protein
Length: 7,856 residues
Chains: 16
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lidless mm-cpn
UniProt: Q877G8
Pockets: 20 · best druggability 0.84

Structure

electron microscopy · 1 distinct chain · 53% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	Lidless mm-cpn	protein	491	53% helix, 18% strand	Q877G8

Pockets

20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	711	0.84	0.87	92	empty
2	501	0.83	0.89	70	empty
3	486	0.83	0.89	65	empty
4	496	0.83	0.89	74	empty
5	494	0.83	0.89	71	empty

Interfaces

24 interfaces between chains.

E–F · 1773 Å² buried · 22 hydrogen bonds · protein-protein
J–K · 1773 Å² buried · 22 hydrogen bonds · protein-protein
O–P · 1771 Å² buried · 22 hydrogen bonds · protein-protein
B–C · 1770 Å² buried · 22 hydrogen bonds · protein-protein
F–G · 1770 Å² buried · 22 hydrogen bonds · protein-protein

Compared structures

3J03 · Lidless Mm-cpn in the closed state with ATP/AlFx · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q877G8
Elsewhere: RCSB PDB 3J03 · PDBe 3J03 · UniProt Q877G8

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