Research workbench
Model of the large subunit RNA expansion segment ES27L-out based on a 6.1 a cryo-EM MAP of saccharomyces cerevisiae translating 80S ribosome. 3IZD is a small part (an expansion segment) which is in an alternative conformation to what is in already 3IZF.
Analyse Model of the large subunit RNA expansion segment ES27L-out based on a 6.1 a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3IZD
- Type
- RNA
- Length
- 151 nucleotides
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RRNA expansion segment ES27L in an "out" conformation
- Pockets
- 4 · best druggability 0.68
Structure
electron microscopy · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RRNA expansion segment ES27L in an "out" conformation | rna | 151 | — | — |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 806 | 0.68 | 0.76 | 34 | empty |
| 2 | 278 | 0.48 | 0.74 | 18 | empty |
| 3 | 279 | 0.46 | 0.73 | 23 | empty |
| 4 | 129 | 0.41 | 0.76 | 16 | empty |
Compared structures
- 3IZD · Model of the large subunit RNA expansion segment ES27L-out based on a 6.1 A cryo-EM map… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3IZD · PDBe 3IZD
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.