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Crystal structure of mycobacterium tuberculosis cytochrome P450 CYP125 in complex with androstenedione

Analyse Crystal structure of mycobacterium tuberculosis cytochrome P450 CYP125 in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3IW1
Type: protein
Length: 398 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytochrome P450 CYP125
EC: 1.14.-.-
UniProt: P63709
Ligands: ASD, HEM
Pockets: 2 · best druggability 0.84

Structure

x-ray diffraction · 1 distinct chain · 49% helix, 11% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytochrome P450 CYP125 (EC 1.14.-.-)	protein	398	49% helix, 11% strand	P63709

Ligands and binding sites

ASD · 4-androstene-3-17-dione · ligand · chains A
HEM · Protoporphyrin IX containing Fe · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	743	0.84	0.87	94	ASD, HEM
2	125	0.42	0.75	19	empty

Compared structures

3IW1 · Crystal structure of Mycobacterium tuberculosis cytochrome P450 CYP125 in complex with… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P63709
Elsewhere: RCSB PDB 3IW1 · PDBe 3IW1 · UniProt P63709

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