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The structure of a functionally unknown conserved protein from silicibacter pomeroyi dss
Analyse The structure of a functionally unknown conserved protein from silicibacter… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3IUS
- Type
- protein
- Length
- 559 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized conserved protein
- UniProt
- Q5LM08
- Pockets
- 4 · best druggability 0.75
Structure
x-ray diffraction · 2 distinct chains · 37% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized conserved protein | protein | 282 | 37% helix, 21% strand | Q5LM08 |
| B | Uncharacterized conserved protein | protein | 277 | 38% helix, 21% strand | Q5LM08 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 886 | 0.75 | 0.79 | 91 | empty |
| 2 | 652 | 0.68 | 0.77 | 68 | FMT |
| 3 | 69 | 0.40 | 0.80 | 17 | empty |
| 4 | 57 | 0.25 | 0.72 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 391 Ų buried · 4 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 3IUS · The structure of a functionally unknown conserved protein from Silicibacter pomeroyi DSS · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5LM08
- Elsewhere: RCSB PDB 3IUS · PDBe 3IUS · UniProt Q5LM08
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