Research workbench
Crystal structure of putative bacterial protein of unknown function (DUF885, PF05960.1, ) from arthrobacter aurescens TC1, reveals fold similar to that of M32 carboxypeptidases
Analyse Crystal structure of putative bacterial protein of unknown function (DUF885… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3IUK
- Type
- protein
- Length
- 1,102 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- A1R4M8
- Ligands
- MG
- Pockets
- 11 · best druggability 0.78
Structure
x-ray diffraction · 2 distinct chains · 66% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 552 | 65% helix, 5% strand | A1R4M8 |
| B | Uncharacterized protein | protein | 550 | 66% helix, 5% strand | A1R4M8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
11 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1098 | 0.78 | 0.80 | 71 | empty |
| 2 | 1134 | 0.78 | 0.80 | 72 | empty |
| 3 | 566 | 0.63 | 0.75 | 43 | empty |
| 4 | 448 | 0.60 | 0.75 | 30 | MG |
| 5 | 441 | 0.59 | 0.75 | 43 | empty |
Interfaces
1 interface between chains.
- A–B · 253 Ų buried · 2 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 22 modified (engineered).
Compared structures
- 3IUK · Crystal structure of putative bacterial protein of unknown function (DUF885, PF05960.1, )… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A1R4M8
- Elsewhere: RCSB PDB 3IUK · PDBe 3IUK · UniProt A1R4M8
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.