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Crystal structure of functional region of uafa from staphylococcus saprophyticus in P212121 form

Analyse Crystal structure of functional region of uafa from staphylococcus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3IRZ
Type: protein
Length: 398 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uro-adherence factor a
UniProt: Q4A0V8
Pockets: 3 · best druggability 0.51

Structure

x-ray diffraction · 1 distinct chain · 6% helix, 54% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uro-adherence factor a	protein	398	6% helix, 54% strand	Q4A0V8

Ligands and binding sites

GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	232	0.51	0.75	29	empty
2	134	0.46	0.77	24	empty
3	165	0.46	0.76	25	empty

Compared structures

3IRZ · Crystal structure of functional region of UafA from Staphylococcus saprophyticus in… · the same entry in another collection · chain A against A, TM-score 1.00
Q4A0V8 · AlphaFold monomer V2.0 prediction for uro-adherence factor a (Q4A0V8) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

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Every structure of UniProt Q4A0V8
Elsewhere: RCSB PDB 3IRZ · PDBe 3IRZ · UniProt Q4A0V8

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