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Structure of putative short-chain dehydrogenase (SARO_0793) from novosphingobium aromaticivorans

Analyse Structure of putative short-chain dehydrogenase (SARO_0793) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3IOY
Type: protein
Length: 547 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Short-chain DEHYDROGENASE/REDUCTASE sdr
UniProt: Q2GA85
Pockets: 5 · best druggability 0.63

Structure

x-ray diffraction · 2 distinct chains · 56% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Short-chain DEHYDROGENASE/REDUCTASE sdr	protein	277	56% helix, 13% strand	Q2GA85
B	Short-chain DEHYDROGENASE/REDUCTASE sdr	protein	270	56% helix, 14% strand	Q2GA85

Pockets

5 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	494	0.63	0.76	49	empty
2	482	0.63	0.76	54	empty
3	86	0.61	0.89	22	empty
4	98	0.60	0.87	27	empty
5	58	0.31	0.76	14	empty

Interfaces

1 interface between chains.

A–B · 4212 Å² buried · 43 hydrogen bonds · protein-protein

Compared structures

3IOY · Structure of putative short-chain dehydrogenase (Saro_0793) from Novosphingobium… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q2GA85
Elsewhere: RCSB PDB 3IOY · PDBe 3IOY · UniProt Q2GA85

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