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Crystal structure of chlorella virus val-1 soaked in 200MM D- glucuronic acid, 10% peg-3350, and 200MM glycine-naoh (pH 10.0)

Analyse Crystal structure of chlorella virus val-1 soaked in 200MM D- glucuronic acid… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3IM0
Type: protein
Length: 243 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Val-1
EC: 4.2.2.3
UniProt: Q9DTZ2
Ligands: BDP
Pockets: 1 · best druggability 0.36

Structure

x-ray diffraction · 1 distinct chain · 5% helix, 48% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Val-1 (EC 4.2.2.3)	protein	243	5% helix, 48% strand	Q9DTZ2

Ligands and binding sites

BDP · beta-D-glucopyranuronic acid · sugar · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	71	0.36	0.77	20	BDP

Compared structures

3IM0 · Crystal structure of Chlorella virus vAL-1 soaked in 200mM D-glucuronic acid, 10%… · the same entry in another collection · chain A against A, TM-score 1.00

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9DTZ2
Elsewhere: RCSB PDB 3IM0 · PDBe 3IM0 · UniProt Q9DTZ2

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