Research workbench
Crystal structure of first orf in transposon ISC1904 from sulfolobus solfataricus P2
Analyse Crystal structure of first orf in transposon ISC1904 from sulfolobus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3ILX
- Type
- protein
- Length
- 279 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- First orf in transposon ISC1904
- UniProt
- Q97UQ9
- Pockets
- 4 · best druggability 0.48
Structure
x-ray diffraction · 2 distinct chains · 48% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | First orf in transposon ISC1904 | protein | 140 | 50% helix, 17% strand | Q97UQ9 |
| B | First orf in transposon ISC1904 | protein | 139 | 47% helix, 17% strand | Q97UQ9 |
Ligands and binding sites
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 152 | 0.48 | 0.77 | 23 | empty |
| 2 | 120 | 0.44 | 0.77 | 21 | empty |
| 3 | 99 | 0.40 | 0.77 | 18 | empty |
| 4 | 59 | 0.33 | 0.77 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 1816 Ų buried · 13 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified, 1 disulfide (engineered, disulfide).
Compared structures
- 3ILX · Crystal structure of First ORF in transposon ISC1904 from Sulfolobus solfataricus P2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q97UQ9
- Elsewhere: RCSB PDB 3ILX · PDBe 3ILX · UniProt Q97UQ9
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