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Crystal structure of a glutamine-dependent NAD(+) synthetase from cytophaga hutchinsonii
Analyse Crystal structure of a glutamine-dependent NAD(+) synthetase from cytophaga… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3ILV
- Type
- protein
- Length
- 580 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glutamine-dependent NAD(+) synthetase
- EC
- 6.3.5.1
- UniProt
- Q11SE1
- Pockets
- 8 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glutamine-dependent NAD(+) synthetase (EC 6.3.5.1) | protein | 580 | 41% helix, 21% strand | Q11SE1 |
Pockets
8 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 396 | 0.63 | 0.78 | 47 | empty |
| 2 | 120 | 0.58 | 0.85 | 20 | empty |
| 3 | 94 | 0.54 | 0.84 | 20 | empty |
| 4 | 239 | 0.52 | 0.76 | 34 | empty |
| 5 | 78 | 0.37 | 0.77 | 13 | empty |
Modifications
Observed in the structure: 10 modified (engineered).
Compared structures
- 3ILV · Crystal structure of a glutamine-dependent NAD(+) synthetase from Cytophaga hutchinsonii · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q11SE1
- Elsewhere: RCSB PDB 3ILV · PDBe 3ILV · UniProt Q11SE1
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