Research workbench
Structural characterization of SMU.440, a hypothetical protein from streptococcus mutans
Analyse Structural characterization of SMU.440, a hypothetical protein from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3IJT
- Type
- protein
- Length
- 283 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative uncharacterized protein
- UniProt
- Q8DVN6
- Pockets
- 3 · best druggability 0.67
Structure
x-ray diffraction · 2 distinct chains · 27% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative uncharacterized protein | protein | 140 | 27% helix, 39% strand | Q8DVN6 |
| B | Putative uncharacterized protein | protein | 143 | 27% helix, 42% strand | Q8DVN6 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 296 | 0.67 | 0.82 | 33 | empty |
| 2 | 278 | 0.66 | 0.82 | 29 | empty |
| 3 | 56 | 0.36 | 0.78 | 10 | empty |
Interfaces
1 interface between chains.
- A–B · 998 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 3IJT · Structural Characterization of SMU.440, a Hypothetical Protein from Streptococcus mutans · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DVN6
- Elsewhere: RCSB PDB 3IJT · PDBe 3IJT · UniProt Q8DVN6
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.