Research workbench
Crystal structure of miraculin like protein from seeds of murraya koenigii
Analyse Crystal structure of miraculin like protein from seeds of murraya koenigii in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3IIR
- Type
- protein
- Length
- 380 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Trypsin inhibitor
- UniProt
- D3G8R9
- Pockets
- 6 · best druggability 0.40
Structure
x-ray diffraction · 1 distinct chain · 3% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Trypsin inhibitor | protein | 190 | 3% helix, 36% strand | D3G8R9 |
Pockets
6 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 75 | 0.40 | 0.79 | 26 | empty |
| 2 | 81 | 0.38 | 0.77 | 20 | empty |
| 3 | 93 | 0.35 | 0.74 | 21 | empty |
| 4 | 82 | 0.33 | 0.74 | 22 | empty |
| 5 | 68 | 0.31 | 0.75 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 790 Ų buried · 5 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 disulfide (disulfide).
Compared structures
- 3IIR · Crystal Structure of Miraculin like protein from seeds of Murraya koenigii · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D3G8R9
- Elsewhere: RCSB PDB 3IIR · PDBe 3IIR · UniProt D3G8R9
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