Research workbench
Small outer capsid protein (soc) from bacteriophage RB69
Analyse Small outer capsid protein (soc) from bacteriophage RB69 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3IGE
- Type
- protein
- Length
- 150 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Soc small outer capsid protein
- UniProt
- Q7Y5B1
Structure
x-ray diffraction · 1 distinct chain · 20% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Soc small outer capsid protein | protein | 75 | 20% helix, 36% strand | Q7Y5B1 |
Ligands and binding sites
- IMD · Imidazole · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 581 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 3IGE · Small outer capsid protein (Soc) from bacteriophage RB69 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7Y5B1
- Elsewhere: RCSB PDB 3IGE · PDBe 3IGE · UniProt Q7Y5B1
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