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Small outer capsid protein (soc) of bacteriophage RB69

Analyse Small outer capsid protein (soc) of bacteriophage RB69 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3IG9
Type: protein
Length: 302 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Soc small outer capsid protein
UniProt: Q7Y5B1
Pockets: 1 · best druggability 0.35

Structure

x-ray diffraction · 2 distinct chains · 20% helix, 34% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, C, D	Soc small outer capsid protein	protein	75	20% helix, 35% strand	Q7Y5B1
B	Soc small outer capsid protein	protein	77	21% helix, 32% strand	Q7Y5B1

Ligands and binding sites

IMD · Imidazole · additive · 4 copies · chains A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	101	0.35	0.74	10	empty

Interfaces

3 interfaces between chains.

B–D · 662 Å² buried · 1 hydrogen bond · protein-protein
A–C · 171 Å² buried · 1 hydrogen bond · protein-protein
C–D · 20 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

3IG9 · Small outer capsid protein (SOC) of bacteriophage RB69 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7Y5B1
Elsewhere: RCSB PDB 3IG9 · PDBe 3IG9 · UniProt Q7Y5B1

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