Research workbench
Crystal structure of mouse plexin A3 intracellular domain
Analyse Crystal structure of mouse plexin A3 intracellular domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3IG3
- Type
- protein
- Length
- 561 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- PLXNA3 protein
- UniProt
- A5D6Q5
- Pockets
- 8 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 59% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | PLXNA3 protein | protein | 561 | 59% helix, 8% strand | A5D6Q5 |
Ligands and binding sites
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 528 | 0.77 | 0.84 | 57 | empty |
| 2 | 190 | 0.48 | 0.76 | 29 | empty |
| 3 | 109 | 0.39 | 0.75 | 15 | empty |
| 4 | 67 | 0.34 | 0.77 | 14 | empty |
| 5 | 73 | 0.31 | 0.74 | 14 | empty |
Compared structures
- 3IG3 · Crystal structure of mouse Plexin A3 intracellular domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A5D6Q5
- Elsewhere: RCSB PDB 3IG3 · PDBe 3IG3 · UniProt A5D6Q5
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