Research workbench
Crystal structure of putative metallopeptidase (YP_001051774.1) from shewanella baltica OS155 at 2.45 a resolution
Analyse Crystal structure of putative metallopeptidase (YP_001051774.1) from shewanella… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3IEH
- Type
- protein
- Length
- 268 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative metallopeptidase
- UniProt
- A3D842
- Ligands
- UNL, ZN
- Pockets
- 1 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative metallopeptidase | protein | 268 | 34% helix, 25% strand | A3D842 |
Ligands and binding sites
- UNL · Unknown ligand · ligand · chains A
- ZN · Zinc ion · metal · chains A
- GOL · Glycerol · additive · 6 copies · chains A
- PEG · Di(hydroxyethyl)ether · additive · 3 copies · chains A
- PGE · Triethylene glycol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 206 | 0.53 | 0.78 | 31 | UNL |
Modifications
Observed in the structure: 3 modified (engineered).
Compared structures
- 3IEH · Crystal structure of Putative metallopeptidase (YP_001051774.1) from SHEWANELLA BALTICA… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A3D842
- Elsewhere: RCSB PDB 3IEH · PDBe 3IEH · UniProt A3D842
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