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Protease-associated domain of the E3 ligase grail

Analyse Protease-associated domain of the E3 ligase grail in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3ICU
Type: protein
Length: 171 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: E3 ubiquitin-protein ligase RNF128
EC: 6.3.2.-
UniProt: Q8TEB7
Ligands: NAG

Structure

x-ray diffraction · 1 distinct chain · 13% helix, 35% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	E3 ubiquitin-protein ligase RNF128 (EC 6.3.2.-)	protein	171	13% helix, 35% strand	Q8TEB7

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 1 glycan (N-glycosylation).

Compared structures

3ICU · Protease-associated domain of the E3 ligase grail · the same entry in another collection · chain A against A, TM-score 1.00
Q8TEB7 · AlphaFold monomer V2.0 prediction for E3 ubiquitin-protein ligase RNF128 (Q8TEB7) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8TEB7
Elsewhere: RCSB PDB 3ICU · PDBe 3ICU · UniProt Q8TEB7

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